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Microarray downloads

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GNomEx
GNomEx 5. 3. 2002 download by Robb Cundick&David Nix GNomEx is Genomic LIMS and Analysis Project Center designed by the Huntsman Cancer Institute for use by microarray and next generation sequencing core facilities and large research laboratories. KWs: Illumina, Affymetrix, Agilent, MAGE, MySQL/Flex...


Type: Freeware;    Released: 04/25/2012;    Filesize: 26.8 MB;    Price: USD $0.00;
Platforms:
Tags: Microarray Sequence, Research Laboratory, Genomic LIMS, Microarray, Sequence, Genome Download
AltAnalyze x64 2.02 Beta
AltAnalyze x64 2.02 Beta 1.0 download by Nathan Salomonis & Bruce Conklin AltAnalyze is a freely available, open-source and cross-platform program that allows you to take RNASeq or relatively raw microarray data (CEL files or normalized), identify predicted alternative splicing or alternative promoter changes and view how these changes may affect protein sequence, domain composition, and microRNA targeting. AltAnalyze is compatible with any RNASeq data that can be aligned to junctions, several Affymetrix splicing ...
Type: Freeware;    Released: 05/23/2012;    Filesize: 42.4 MB;    Price: USD $0.00;
Platforms:
Tags: Analyze Raw Microarray Data, Raw Microarray Data Analysis, View Protein Sequence, Analyzer, Analyze, Analysis Download
AltAnalyze 2.02 Beta
AltAnalyze 2.02 Beta 1.0 download by Nathan Salomonis & Bruce Conklin AltAnalyze is a freely available, open-source and cross-platform program that allows you to take RNASeq or relatively raw microarray data (CEL files or normalized), identify predicted alternative splicing or alternative promoter changes and view how these changes may affect protein sequence, domain composition, and microRNA targeting. AltAnalyze is compatible with any RNASeq data that can be aligned to junctions, several Affymetrix splicing ...
Type: Freeware;    Released: 03/06/2012;    Filesize: 42.4 MB;    Price: USD $0.00;
Platforms:
Tags: Analyze Raw Microarray Data, Raw Microarray Data Analysis, View Protein Sequence, Analyzer, Analyze, Analysis Download
MeV r2536 download by MeV MeV or Multiple Experiment Viewer is a Java tool to help you with microarray gene expression data analysis. MeV supports 5 input formats, and provides an intuitive graphical interface for clustering, classification, statistical analysis and theme ...
Type: Freeware;    Filesize: 64.1 MB;    Price: USD $0.00;
Platforms: Windows, Windows XP, Windows Vista
Tags: Data, Analyzer, Microarray, Gene, Analysis, Analyze Download
AutoMATRIX 1.0.1 PreAlpha download by Benjamin Kormeier The Open Source and accessible AutoMATRIX tool was developed to help predict key transcription factors in microarray experiments.

AutoMATRIX was specially designed to offer a convenient and user-friendly identification of transcription factors for observed expression patterns.

All the AutoMATRIX results can be exported into spreadsheets for post-processing with external tools.

AutoMATRIX is a small utility that was ...
Type: Freeware;    Price: USD $0.00;
Platforms:
Tags: AutoMATRIX, Key, Transcription, Microarray, Experiment, Factor, Prediction Download
noise-free-cnv 1.2 Beta download by Philip Ginsbach noise-free-cnv was developed as an easy-to-use and Open Source program for analyzing and manipulating DNA microarray data.

CNV calling software may produce false-positive calls due to imperfect source material. Direct inspection of the microarray data with the noise-free-cnv software helps to appreciate the quality of the data and to identify artificial calls.

With noise-free-cnv it is possible to visualize individual datasets, ...
Type: Freeware;    Price: USD $0.00;
Platforms: Windows, Windows Vista
Tags: Noise-Free-Cnv, Dna, Microarray, Manipulation, Data Download
MEFIT 1.2 download by Curtis Huttenhower MEFIT, also known as the microarray Experiment Functional Integration Technology is developed as a system for microarray integration.

Given any amount of microarray data, it predicts the probability of pairwise functional relationship for any gene pair within individual biological functions.

As a framework, MEFIT uses the results of many microarray experiments in combination with known biological process annotations (drawn from ...
Type: Shareware;    Price: USD $0.00;
Platforms:
Tags: MEFIT, Microarray, Integration, Probability, Prediction, Experiment Download
Venn Mapper 1.01 download by Marcel Smid The application loads microarray data (gene expression ratios) and determines which genes are up- or downregulated by a user-defined ratio cut-off level.

For each experiment, lists of differentially expressed genes are computed. Every list will be compared to every other list, and the number of co-occurring genes will be calculated.

With the use of the binomial distribution, so called z-values can be assigned to the overlap found ...
Type: Shareware;    Price: USD $0.00;
Platforms:
Tags: Venn, Mapper, Microarray, Data, Analysis, Gene, Expression, Analyzer, Analyze Download
Integrated Genome Browser 6.7.1 B10851 1.0 download by Integrated Genome Browser Team The Integrated Genome Browser (IGB, pronounced Ig-Bee) is an interactive, zoomable, scrollable software program you can use to visualize and explore genome-scale data sets, such as tiling array data, next-generation sequencing results, genome annotations, microarray designs, and the sequence itself. IGB is implemented using the Java programming language and should run on any computer. IGB is an open source, publicly-funded project, but it did ...
Type: Freeware;    Released: 07/01/2012;    Filesize: 8.4 MB;    Price: USD $0.00;
Platforms:
Tags: View Microarray Design, Microarray Design Viewer, Explore Genome-Scale Data, Visualization, View, Viewer Download
Integrated Genome Browser 6.6.3 B10023 download by Integrated Genome Browser Team The Integrated Genome Browser (IGB, pronounced Ig-Bee) is an interactive, zoomable, scrollable software program you can use to visualize and explore genome-scale data sets, such as tiling array data, next-generation sequencing results, genome annotations, microarray designs, and the sequence itself. IGB is implemented using the Java programming language and should run on any computer.

IGB is an open source, publicly-funded project, but ...
Type: Freeware;    Released: 07/12/2012;    Filesize: 8.4 MB;    Price: USD $0.00;
Platforms:
Tags: View Microarray Design, Microarray Design Viewer, Explore Genome-Scale Data, Visualization, View, Viewer Download
Annotare 1.2 download by Annotare Team Annotare is a tool for annotating microarray and Gene Expression data. It will help a bench biologist construct a MIAME-compliant annotation file based on the MAGE-TAB format.

It is a stand-alone desktop application that features a set of intuitive editor forms to create and modify annotations and support for easy incorporation of terms from biomedical ontologies.

The application also provides standard templates for common experiment ...
Type: Shareware;    Price: USD $0.00;
Platforms: Windows, Windows XP, Windows Vista
Tags: Annotare, Annotation, Tool, Microrray, Data, Gene, Expression Download
Advanced Pathway Painter
Advanced Pathway Painter 2.05 download by GSA This program visualizes pathways. The user can display any kind of quantitative data from gene and protein experiments directly within the pathways (colours represent the value). Automatic pathway update from KEGG, BioCarta and GenMAPP. This freeware program visualizes pathways (KEGG, BioCarta, GenMAPP, ...). The user has the possibility to display any kind of quantitative data from gene and protein experiments directly within the pathways (colours represent the value). The linking between ...
Type: Freeware;    Released: 12/18/2007;    Filesize: 2.0 MB;    Price: USD $0.00;
Platforms: Windows 95, Windows 98, Windows Me, Windows 2000, Windows XP, Windows 2003, Windows Vista
Tags: Pathway, Kegg, Genmapp, Biocarta, Biology, Bioinformatics, Bioscience, Affymetrix, Microarray, Experiment Download
GENOM 2005
GENOM 2005 3.28 download by GSA Feature rich and user friendly application for analysing array-experiments (e.g. from provider Affymetrix). It includes additional gene information, multiple analysis methods, automatic pathway mapping with an editor, function prediction... Genom 2005 is a feature rich and user friendly application for analysing array-experiments (e.g. from provider Affymetrix). It includes normalisation of raw data, additional gene information official gene names, location, function prediction, sequences, ...
Type: Demo;    Released: 11/01/2007;    Filesize: 2.3 MB;    Price: USD $1499.00, EUR 799;
Platforms: Windows 95, Windows 98, Windows Me, Windows 2000, Windows XP, Windows 2003, Windows Vista
Tags: Affymetrix, Microarray, Pathway, Function Prediction, Probeset, Kegg, Genmapp, Biocarta, Biology, Bioscience Download
Sylamer 1.0 download by Stijn van Dongen

Typically it is used to find significant enrichment or depletion of microRNA or siRNA seed sequences from microarray expression data.

Sylamer is extremely fast and can be applied to genome-wide datasets with ease. Results are plotted in terms of a significance landscape plot. These plots show significance profiles for each word studied across the sorted genelist.


Type: Shareware;    Price: USD $0.00;
Platforms:
Tags: Sylamer, Gene, Sequence, Finder, Find, Genetics Download
BCLUST New download by Hongyu Zhao

Because of the rapid development of microarray technologies, many of statistical procedures, most notably a variety of clustering algorithms, have been successfully applied to analyze such kind of data.

for WindowsAll

Type: Shareware;    Price: USD $0.00;
Platforms:
Tags: BCLUST, Expression, Data, Analysis, Gene, Clusters, Reliability, Bootstrap, Resampling, Method Download
GProcessor 3.0 download by Hongyu Zhao GProcessor is a small, easy to use application specially designed to help you with the statistical analysis of GenePix data, including dye effect adjustment and ANOVA analysis.

microarray is one of the most fascinating technologies in the millennium. It is a novel invention to exploit DNA sequence data and produce useful information of gene expression levels for the entire genomes.

Besides its enormous scientific potential to ...
Type: Shareware;    Price: USD $0.00;
Platforms:
Tags: GProcessor, GenePix, Data, Analysis, Analyze, Dye, Effect, Adjustment, Analyzer Download
CLANS 2 download by CLANS Team

The problem of finding groups of co-regulated genes across a number of microarray experiments is quite similar to the problem of finding groups of homologous proteins in a large dataset. In both cases we have huge amounts of data and are looking for those few genes that show some kind of significant similarity.

Putative co-regulation as well as putative homology are generally inferred from similarities in the feature set of ...
Type: Shareware;    Price: USD $0.00;
Platforms:
Tags: CLANS, Cluster, Analysis, Sequence, Analyze Download