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De Novo pipeline 1.4.4 download by Benoit Valot The De novo pipeline is a Java-based software that allows users to remove spectra previously identified by X!Tandem. Also, De novo Pipeline can perform an analysis on the remaining spectra.

The results generated by De novo pipeline can be graphically viewed and / or exported into tabulated files.

The De novo pipeline is designed to be a complementary software to X!Tandem.



Type: Shareware;    Price: USD $0.00;
Platforms:
Tags: De, Novo, Pipeline, Spectra, Remover, Remove, Analysis Download
Tag-DB 0.3.5 Beta download by Thilo Muth & Harald Barsnes Tag-DB is an easy to use application designed for de novo sequencing of protein identification files. It can process and analyze sequences of MS/MS spectra and tag-based proteins.

Furthermore, you can use Tag-DB to analyze a protein database and search derived short amino acid sequences.

Type: Shareware;    Price: USD $0.00;
Platforms:
Tags: Tag-DB, De, Novo, Algorithm, Sequencing, Protein, Analyzer Download
Scaffold_builder 2.0 download by Scaffold_builder Team Scaffold_builder is an useful Command Line-based software application that can be used to combine de novo and reference-guided assemblies.

Scaffold_builder is a Python-based program that manages to fill all the gaps with N's. Moreover, Scaffold_builder uses Muscle to align small overlaps.


Type: Freeware;    Price: USD $0.00;
Platforms:
Tags: Builder, Contig, Align, Scaffold, Creator, Assembly Download
Genomic Peptide Finder 2.1.4 download by Michael Specht Genomic Peptide Finder is a compact toolbox that can help you match de novo predicted amino acid sequences to the genomic DNA sequence. The gpfindex tool can process fasta DNA files in order to create GPF index files.

The applications can be used in command line mode or by using the Command Prompt window. To start using the program you can read the documentation provided by the developer here.


Type: Shareware;    Price: USD $0.00;
Platforms:
Tags: Genomic, Finder, Peptide, Identification, Tool, Create, GPF, Index, Dna, Sequence Download
HeckleWorks Pro
HeckleWorks Pro 4.0 download by The Daily Grind Network HeckleWorks is a the premier robotic heckle, jibe, insult and realtime personality evaluation generator for OS X. HeckleWorks features a broad vocabulary and some grammatical variations, for de novo jibe generation. Alternatively, you can specify the targets, for the abuse they so richly deserve. The "Yell Continuously" function generates a constant stream of heckles, ...
Type: Freeware;    Released: 10/12/2005;    Filesize: 155.8 KB;    Price: USD $0.00;
Platforms: Macintosh, Mac OS X
Tags: Heckle, Humour, Humor, Joke, Abuse, Jibe, Harsh Download
Dewqs' NMS for Outlook
Dewqs' NMS for Outlook 4.44 download by JunkWarden - Dewqs' Tribes And if you don't use Outlook, try our sister product, Dewq's No More Spam for Outlook Express! New For non-English speakers: Can block any email written in English! Nuevo: puede bloquear todo mensaje escrito en inglesà novo: Blocca tutti i messaggi scritti in inglese! Nouveau : peut bloquer tout message Úcrit en anglais ! Neu : kann alle in Englisch geschriebene Nachrichten sperren ...
Type: Shareware;    Released: 03/08/2007;    Filesize: 3.4 MB;    Price: USD $29.95;
Platforms: Windows, Windows 98, Windows Me, Windows NT, Windows 2000, Windows XP, Windows 2003
Tags: Spam, Filter, Email, Internet, Web Download
JunkWarden-Dewqs for Outlook Express
JunkWarden-Dewqs for Outlook Express 4.44 download by Dewqs' Tribes - JunkWarden Dewqs' NMS for Outlook Express is a spam screener for Microsoft Outlook Express. Powerful heuristic engine (statistical dictionary) can be updated via the web (registered users only). Reporting on demand. And if you don't use Outlook Express, try our sister product, Dewq's No More Spam, which is a standalone application! Or any other one of our five award-winning products! New For non-English speakers: Can block any email written in English! Nuevo: puede bloquear todo mensaje escrito en inglesà novo: Blocca ...
Type: Shareware;    Released: 03/08/2007;    Filesize: 1.4 MB;    Price: USD $29.95;
Platforms: Windows, Windows 98, Windows Me, Windows NT, Windows 2000, Windows XP
Tags: Spam, Filter, Email, Internet, Web Download
Free Video to Tablet PC Converter
Free Video to Tablet PC Converter 5.0.8 download by DVDVideoSoft Ltd Convert video files to MP4 video format for Tablet PC with Free Video to Tablet PC Converter. You can save videos in high, standard and economy quality. Free Video to Tablet PC Converter supports a wide range of popular Android tablets. 7, BlackBerry Playbook, ViewSonic gTablet, Ainol Novo7 Aurora, ELF, Arnova 10, ViewSonic Viewpad 10, SuperPad, Acer Aspire One, HP Slate 500, Creative ZiiO 10, Toshiba Folio, ZTE V, Coby Kyros MID8024, Velocity Micro, ViewSonic ViewPad 7, Dell Streak 7, Sylvania Magni, Coby Kyros 7, Archos 7, Creative ZiiO 7, Ainol novo 7, Dropad ...
Type: Freeware;    Released: 04/12/2012;    Filesize: 24.3 MB;    Price: USD $0.00;
Platforms: Windows XP, Windows Vista
Tags: Free Video To Tablet Pc Converter, Webm, Avi, Mp4, 3gp, Wmv, Video Converter, Convert Video, Webm To Mp4, Avi To Mp4 Download
Unipro UGENE
Unipro UGENE 1. 9. 2005 download by Unipro

Features:

Integrated tools
Multiple sequence alignment using MUSCLE 3, KAlign, Clustal;
HMM profiles build and search, based on the source of HMMER 2 and HMMER 3;
PCR Primers design using Primer 3;
Cloning in silico capabilities;
Queries to NCBI BLAST and CDD databases;
Protein secondary structure prediction using GOR IV and PSIPRED;
Phylogenetic analysis with Phylip;
Search for restriction enzymes and integration with REBASE;
Extremely fast repeat finder;
DNA short reads to reference alignment using Bowtie;
De novo assembly ...
Type: Freeware;    Released: 06/09/2012;    Filesize: 19.3 MB;    Price: USD $0.00;
Platforms:
Tags: Dna, Education, Visual Software, Analyze, Genetic Download
PEAKS Studio 5.3 B20110719
PEAKS Studio 5.3 B20110719 1.0 download by Bioinformatics Solutions Inc. FEATURES: de novo sequencing: · Sequence peptides without a database and potentially identify novel peptides that are not in any database. PEAKS DB: · Protein and peptides accurate identification inChorus: · Benchmark several engines and validate your results PTM Finder: · Perform a more specific search in less time. SPIDER: · Sequence tag homology searching to identify any potential mutations in the results PEAKS ...
Type: Shareware;    Released: 08/08/2012;    Filesize: 175.3 MB;    Price: USD $0.00;
Platforms:
Tags: Mass Spectrometry, Organism Study, PTM Identification, Spectrometry, Organism, Peptide Download
Unipro UGENE 64-bit
Unipro UGENE 64-bit 1.11.4 download by Unipro

Features:

Integrated tools
Multiple sequence alignment using MUSCLE 3, KAlign, Clustal;
HMM profiles build and search, based on the source of HMMER 2 and HMMER 3;
PCR Primers design using Primer 3;
Cloning in silico capabilities;
Queries to NCBI BLAST and CDD databases;
Protein secondary structure prediction using GOR IV and PSIPRED;
Phylogenetic analysis with Phylip;
Search for restriction enzymes and integration with REBASE;
Extremely fast repeat finder;
DNA short reads to reference alignment using Bowtie;
De novo assembly ...
Type: Shareware;    Filesize: 28.2 MB;    Price: USD $0.00;
Platforms: Windows, Windows XP, Windows Vista
Tags: Education Visual Software Analyze Genetic Download
ProteoCloud 1.01 download by Thilo Muth & Lennart Martens The program is based on a cloud computing pipeline that supports database searching and de novo.

The results of the search are stored on a SQL server that can be accessed from the cloud with minimum effort.


Type: Shareware;    Price: USD $0.00;
Platforms:
Tags: ProteoCloud, Peptide, Identification, Database, Search, Identify, Protein Download
BioKanga 1.11.0 download by biostuartjs

Kangadna is the primary component of an additional two part toolkit targeted towards the de novo assembly of NGS short read datasets. The secondary component, kangahrdx ( K-mer Adaptive Next Gen Aligner Homozygosity Reduction) is primarily targeted towards RNA-seq transcriptomics whereby transcript isoforms result in many assembled contigs sharing regions of high identity most likely constituent exons.

Toolset components:
Type: Shareware;    Price: USD $0.00;
Platforms:
Tags: BioKanga, Bioinformatics, Suite, Toolset, Sequencing, Analytics, Sequence Download
Mascot Distiller 2.3.2 download by Matrix Science Ltd

These are optional collections of tools for specific tasks, such as Mascot search result review, automatic and manual de novo sequencing, and batch processing. Give Mascot Distiller a try to see what it's really capable of! for WindowsXP, Vista, 7

Type: Shareware;    Price: USD $0.00;
Platforms: Windows, Windows XP, Windows Vista
Tags: Mascot, Distiller, Mass, Spectrometry, Calculate, Isotope, Distribution, De-Isotoped, Peak, List Download
FragmentationAnalyzer 1.5.9 download by Harald Barsnes, Lennart Martens

Nine different analysis types are supported:
· Spectra Visualization - visualize the MS/MS spectra with fragment ion annotation, zooming and manual de-novo-sequencing.
· Intensity Box Plots - analyze intensity variation for a set of identification of the same peptide.
· Intensity Correlation - detect how the intensity correlates with the spread in intensity.
· Intensity Meta Plots - further ...
Type: Shareware;    Price: USD $0.00;
Platforms:
Tags: FragmentationAnalyzer, Analyze, Fragmentation, Ms, Spectra, Visualization Download